Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0158 | DVU_3308 | DVU_0158 | DVU_3308 | Conserved hypothetical protein TIGR00104; Identified by match to protein family HMM PF00596; match to protein family HMM PF01980; match to protein family HMM TIGR00104. | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | 0.400 |
| DVU_3308 | DVU_0158 | DVU_3308 | DVU_0158 | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | Conserved hypothetical protein TIGR00104; Identified by match to protein family HMM PF00596; match to protein family HMM PF01980; match to protein family HMM TIGR00104. | 0.400 |
| DVU_3308 | DVU_3309 | DVU_3308 | DVU_3309 | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | Endo/excinuclease amino terminal domain protein; Identified by match to protein family HMM PF01541; Belongs to the UPF0213 family. | 0.692 |
| DVU_3308 | DVU_3310 | DVU_3308 | DVU_3310 | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.733 |
| DVU_3308 | psd | DVU_3308 | DVU_2979 | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | Phosphatidylserine decarboxylase-related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.485 |
| DVU_3308 | ubiX | DVU_3308 | DVU_3307 | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.771 |
| DVU_3309 | DVU_3308 | DVU_3309 | DVU_3308 | Endo/excinuclease amino terminal domain protein; Identified by match to protein family HMM PF01541; Belongs to the UPF0213 family. | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | 0.692 |
| DVU_3309 | DVU_3310 | DVU_3309 | DVU_3310 | Endo/excinuclease amino terminal domain protein; Identified by match to protein family HMM PF01541; Belongs to the UPF0213 family. | ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.783 |
| DVU_3309 | ubiX | DVU_3309 | DVU_3307 | Endo/excinuclease amino terminal domain protein; Identified by match to protein family HMM PF01541; Belongs to the UPF0213 family. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.454 |
| DVU_3310 | DVU_3308 | DVU_3310 | DVU_3308 | ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | 0.733 |
| DVU_3310 | DVU_3309 | DVU_3310 | DVU_3309 | ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | Endo/excinuclease amino terminal domain protein; Identified by match to protein family HMM PF01541; Belongs to the UPF0213 family. | 0.783 |
| DVU_3310 | ubiX | DVU_3310 | DVU_3307 | ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.612 |
| psd | DVU_3308 | DVU_2979 | DVU_3308 | Phosphatidylserine decarboxylase-related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | 0.485 |
| ubiX | DVU_3308 | DVU_3307 | DVU_3308 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. | 0.771 |
| ubiX | DVU_3309 | DVU_3307 | DVU_3309 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | Endo/excinuclease amino terminal domain protein; Identified by match to protein family HMM PF01541; Belongs to the UPF0213 family. | 0.454 |
| ubiX | DVU_3310 | DVU_3307 | DVU_3310 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.612 |