Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3328Hypothetical protein; Identified by Glimmer2; putative. (109 aa)    
Predicted Functional Partners:
DVU_3329
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_3330
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE1332.
  
    0.573
DVU_3327
Multidrug resistance protein, Smr family; Identified by similarity to GP:12024949; match to protein family HMM PF00893.
  
    0.454
DVU_3331
Hypothetical protein; Identified by Glimmer2; putative.
       0.420
DVU_3332
Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.
       0.420
DVU_3333
Hypothetical protein; Identified by Glimmer2; putative.
       0.420
DVU_3326
Multidrug resistance protein, Smr family; Identified by similarity to GP:12024949; match to protein family HMM PF00893.
       0.400
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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