Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_3344Hypothetical protein; Identified by Glimmer2; putative. (389 aa)    
Predicted Functional Partners:
DVU_2118
Conserved hypothetical protein; Identified by similarity to OMNI:CT0429.
 
  
 0.919
DVU_2121
Response regulator; Identified by match to protein family HMM PF00072.
 
  
 0.910
DVU_2123
Membrane protein, putative; Identified by similarity to OMNI:NTL01RS0651.
 
  
 0.908
DVU_2124
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00146.
 
    0.887
DVU_3342
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.857
DVU_2122
Type II/IV secretion system protein; Identified by similarity to GP:10334985; match to protein family HMM PF00437.
 
  
 0.853
DVU_2117
Membrane protein, putative.
 
  
 0.805
DVU_2119
Type II/III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
  
 0.761
DVU_3343
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.758
DVU_3345
Hypothetical protein; Identified by Glimmer2; putative.
       0.697
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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