Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_3374Permease, putative; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (277 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE, putative; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.999
DVU_2337
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
 
 
 0.966
ilvD
Dihydroxy-acid dehydratase; Identified by similarity to SP:P51785; match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.
     
 0.775
DVU_3188
Identified by match to protein family HMM PF00877.
 
 
 
 0.685
DVU_1392
Identified by match to protein family HMM PF00877.
 
 
 
 0.684
DVU_0896
Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.
   
 
 0.574
DVU_1487
Conserved domain protein.
   
 
 0.574
DVU_2154
Tail assembly protein, putative; Identified by match to protein family HMM PF00877.
   
 
 0.574
rluD/coaE
Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.530
DVU_3372
Hypothetical protein; Identified by Glimmer2; putative.
       0.491
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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