STRINGSTRING
DVU_3376 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3376" - Identified by match to protein family HMM PF00884 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3376Identified by match to protein family HMM PF00884 (524 aa)    
Predicted Functional Partners:
dgkA
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid (124 aa)
   
        0.932
DVU_1563
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (1039 aa)
   
 
  0.697
DVU_2588
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486 (226 aa)
   
   
  0.691
DVU_0134
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (345 aa)
   
 
  0.597
DVU_1892
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (249 aa)
   
 
  0.593
DVU_0117
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (305 aa)
   
 
  0.593
DVU_3378
Identified by match to protein family HMM PF04073 (153 aa)
              0.571
DVU_1214
Identified by match to protein family HMM PF02366 (667 aa)
   
   
  0.551
DVU_0635
Identified by match to protein family HMM PF02366 (528 aa)
   
   
  0.551
DVU_3013
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (568 aa)
   
   
  0.531
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (17%) [HD]