zraS protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zraS

Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (679 aa)

Predicted Functional Partners:

DVU_3381

0.993

DVU_0271

0.872

DVU_3215

0.826

DVU_0140

0.815

DVU_0581

0.815

DVU_3238

0.815

DVU_2963

0.804

DVU_0145

0.800

DVU_2966

0.800

glnB-1

0.799

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0140	zraS	DVU_0140	DVU_3382	Response regulator; Identified by match to protein family HMM PF00072.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.815
DVU_0145	zraS	DVU_0145	DVU_3382	Response regulator; Identified by match to protein family HMM PF00072.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.800
DVU_0271	zraS	DVU_0271	DVU_3382	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.872
DVU_0581	zraS	DVU_0581	DVU_3382	Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.815
DVU_2963	zraS	DVU_2963	DVU_3382	Response regulator; Identified by match to protein family HMM PF00072.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.804
DVU_2966	zraS	DVU_2966	DVU_3382	Response regulator; Identified by match to protein family HMM PF00072.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.800
DVU_3215	zraS	DVU_3215	DVU_3382	Response regulator; Identified by match to protein family HMM PF00072.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.826
DVU_3238	zraS	DVU_3238	DVU_3382	Response regulator; Identified by match to protein family HMM PF00072.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.815
DVU_3381	zraS	DVU_3381	DVU_3382	Transcriptional regulatory protein zraR; Identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.993
glnB-1	zraS	DVU_1232	DVU_3382	Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family.	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.799
zraS	DVU_0140	DVU_3382	DVU_0140	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072.	0.815
zraS	DVU_0145	DVU_3382	DVU_0145	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072.	0.800
zraS	DVU_0271	DVU_3382	DVU_0271	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.	0.872
zraS	DVU_0581	DVU_3382	DVU_0581	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.	0.815
zraS	DVU_2963	DVU_3382	DVU_2963	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072.	0.804
zraS	DVU_2966	DVU_3382	DVU_2966	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072.	0.800
zraS	DVU_3215	DVU_3382	DVU_3215	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072.	0.826
zraS	DVU_3238	DVU_3382	DVU_3238	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072.	0.815
zraS	DVU_3381	DVU_3382	DVU_3381	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Transcriptional regulatory protein zraR; Identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.993
zraS	glnB-1	DVU_3382	DVU_1232	Sensor protein ZraS; Identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family.	0.799

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About