STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3386Permease, putative; Identified by match to protein family HMM PF03773. (460 aa)    
Predicted Functional Partners:
DVU_2661
Twin-arginine translocation pathway signal sequence domain protein.
  
  
 0.569
DVU_0684
hflK protein, putative; HflC and HflK could encode or regulate a protease.
 
      0.559
DVU_3385
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.546
DVU_0651
Membrane protein, putative.
  
    0.446
DVU_1703
Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.435
DVU_1644
Permease, putative; Identified by match to protein family HMM PF03773.
  
    0.411
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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