STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHR51489.1PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family. (145 aa)    
Predicted Functional Partners:
EHR49527.1
Cysteine desulfurase family protein; PFAM: Aminotransferase class-V.
  
 0.999
EHR51490.1
Cysteine desulfurase-like protein, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.999
EHR51491.1
PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
 
  
 0.998
EHR51488.1
Putative metal-sulfur cluster biosynthetic enzyme; PFAM: Domain of unknown function DUF59.
 
    0.997
EHR48687.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein, VC1184 subfamily.
 
 0.994
EHR50368.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
 
 0.991
EHR51492.1
FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD.
 
  
 0.990
EHR52063.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
  
 0.989
EHR51493.1
FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
 
  
 0.988
EHR48946.1
Flavodoxin reductase family protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain.
  
 0.921
Your Current Organism:
Saccharomonospora marina
NCBI taxonomy Id: 882083
Other names: S. marina XMU15, Saccharomonospora marina DSM 45390, Saccharomonospora marina XMU15, Saccharomonospora marina str. XMU15, Saccharomonospora marina strain XMU15
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