STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EID54268.1Transcriptional regulator; PFAM: Tetracyclin repressor, C-terminal all-alpha domain; Bacterial regulatory proteins, tetR family. (264 aa)    
Predicted Functional Partners:
EID54266.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
 
     0.659
EID54267.1
PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.
       0.526
EID53906.1
PFAM: EAL domain; GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
  
 0.498
EID52483.1
PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
  
    0.495
EID54602.1
PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
  
    0.495
EID54265.1
PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.
       0.479
EID55769.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.416
EID54263.1
Hypothetical protein.
       0.415
EID54264.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; manually curated.
       0.415
Your Current Organism:
Saccharomonospora xinjiangensis
NCBI taxonomy Id: 882086
Other names: S. xinjiangensis XJ-54, Saccharomonospora xinjiangensis DSM 44391, Saccharomonospora xinjiangensis XJ-54, Saccharomonospora xinjiangensis str. XJ-54, Saccharomonospora xinjiangensis strain XJ-54
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