Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC7Zinc finger CCHC-type containing 7. (615 aa)    
Predicted Functional Partners:
TENT4B
Terminal nucleotidyltransferase 4B.
   
 0.998
MTREX
Mtr4 exosome RNA helicase.
   
 0.997
TENT4A
Terminal nucleotidyltransferase 4A.
   
 0.997
ZCCHC8
Zinc finger CCHC-type containing 8.
     
 0.976
PUM3
Pumilio RNA binding family member 3.
   
   0.885
NCBP1
Nuclear cap binding protein subunit 1.
    
 
 0.857
SCAF8
SR-related CTD associated factor 8.
    
 
 0.766
SCAF4
SR-related CTD associated factor 4.
    
 
 0.766
EXOSC10
Exosome component 10.
   
 0.744
C1D
C1D nuclear receptor corepressor.
   
 0.725
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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