Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBI1ORC ubiquitin ligase 1. (715 aa)    
Predicted Functional Partners:
CNOT11
CCR4-NOT transcription complex subunit 11.
    
 
 0.927
CNOT10
CCR4-NOT transcription complex subunit 10.
    
 
 0.910
WRAP73
WD repeat containing, antisense to TP73.
    
   0.862
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 
 0.815
TCEANC
Transcription elongation factor A N-terminal and central domain containing.
    
   0.788
RC3H1
Ring finger and CCCH-type domains 1.
    
 
 0.733
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.703
PRDM10
PR/SET domain 10.
      
 0.645
ORC3
Origin recognition complex subunit 3.
   
 
 0.643
ORC5
Origin recognition complex subunit 5.
    
 
 0.609
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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