Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPS15ARibosomal protein S15a. (130 aa)    
Predicted Functional Partners:
RPS20
Ribosomal protein S20.
  
 0.999
ENSAHAP00000003310
annotation not available
  
 0.999
ENSAHAP00000004948
annotation not available
   
 0.999
RPSA
Ribosomal protein SA.
  
 0.999
ENSAHAP00000018586
annotation not available
  
 0.999
RPS16
Ribosomal protein S16.
  
 0.999
ENSAHAP00000027042
annotation not available
  
 0.999
ENSAHAP00000001079
annotation not available
  
 0.998
RPS21
Ribosomal protein S21.
   
 0.998
RPS14
Ribosomal protein S14.
  
 0.998
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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