STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VRK2VRK serine/threonine kinase 2. (546 aa)    
Predicted Functional Partners:
ANKLE2
Ankyrin repeat and LEM domain containing 2.
   
 0.993
BANF1
Barrier to autointegration factor 1.
    
 0.962
OGFOD3
2-oxoglutarate and iron dependent oxygenase domain containing 3.
      
 0.923
TMEM161A
Transmembrane protein 161A.
      
 0.891
TMEM53
Transmembrane protein 53.
      
 0.874
PIGB
Phosphatidylinositol glycan anchor biosynthesis class B.
      
 0.871
ZDHHC6
Zinc finger DHHC-type containing 6.
      
 0.830
MAP3K7
Mitogen-activated protein kinase kinase kinase 7.
   
 0.795
ENSAHAP00000021947
annotation not available
    
 0.782
RIOK2
RIO kinase 2.
   
 0.779
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.