STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TATDN3TatD DNase domain containing 3. (224 aa)    
Predicted Functional Partners:
ENSAHAP00000020176
annotation not available
      
 0.612
RPS6KC1
Ribosomal protein S6 kinase C1.
      
 0.612
KATNAL2
Katanin catalytic subunit A1 like 2.
     
 0.609
ANGEL2
Angel homolog 2.
      
 0.605
LYPD6B
LY6/PLAUR domain containing 6B.
      
 0.599
SKAP2
Src kinase associated phosphoprotein 2.
      
 0.591
SHLD1
Shieldin complex subunit 1.
      
 0.589
OPTN
Optineurin.
      
 0.584
APLF
Aprataxin and PNKP like factor.
   
  
 0.582
GPCPD1
Glycerophosphocholine phosphodiesterase 1.
     
 0.576
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.