STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EBF1EBF transcription factor 1. (542 aa)    
Predicted Functional Partners:
EEF1G
Eukaryotic translation elongation factor 1 gamma.
    
   0.726
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.643
SCD
stearoyl-CoA desaturase.
   
 
 0.614
SCD5
stearoyl-CoA desaturase 5.
   
 
 0.614
PLAA
Phospholipase A2 activating protein.
    
   0.612
YOD1
YOD1 deubiquitinase.
    
   0.612
LHX2
LIM homeobox 2.
   
 
 0.610
LHX9
LIM homeobox 9.
   
 
 0.593
ZNF423
Zinc finger protein 423.
   
 0.570
PAX5
Paired box 5.
   
 
 0.555
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.