STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMGB2High mobility group box 2. (207 aa)    
Predicted Functional Partners:
TLR4
Toll like receptor 4.
    
 0.957
ENSAHAP00000012960
annotation not available
    
 0.927
LY96
Lymphocyte antigen 96.
    
 0.770
HMGB3
High mobility group box 3.
   
   0.746
ENSAHAP00000010519
annotation not available
    
 0.741
ITGAV
Integrin subunit alpha V.
     
 0.736
ENSAHAP00000020396
annotation not available
   
 
  0.736
NBN
Nibrin.
     
  0.718
ACTR8
Actin related protein 8.
    
 0.713
ACTR5
Actin related protein 5.
    
 0.706
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.