TMEM144 protein (Apteryx haastii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TMEM144

Transmembrane protein 144. (287 aa)

Predicted Functional Partners:

LZIC

0.676

RTRAF

0.662

PLCXD1

0.622

GLRB

0.620

TMEM19

0.620

ENSAHAP00000019845

0.618

SLC35E4

0.604

SLC35B3

0.604

TMEM192

0.601

ENSAHAP00000015845

0.599

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAHAP00000015845	SLC35E4	ENSAHAP00000015845	ENSAHAP00000002109	annotation not available	Solute carrier family 35 member E4.	0.663
ENSAHAP00000015845	TMEM144	ENSAHAP00000015845	ENSAHAP00000001040	annotation not available	Transmembrane protein 144.	0.599
ENSAHAP00000019845	LZIC	ENSAHAP00000019845	ENSAHAP00000014526	annotation not available	Leucine zipper and CTNNBIP1 domain containing.	0.593
ENSAHAP00000019845	TMEM144	ENSAHAP00000019845	ENSAHAP00000001040	annotation not available	Transmembrane protein 144.	0.618
GLRB	TMEM144	ENSAHAP00000001421	ENSAHAP00000001040	Glycine receptor beta.	Transmembrane protein 144.	0.620
LZIC	ENSAHAP00000019845	ENSAHAP00000014526	ENSAHAP00000019845	Leucine zipper and CTNNBIP1 domain containing.	annotation not available	0.593
LZIC	TMEM144	ENSAHAP00000014526	ENSAHAP00000001040	Leucine zipper and CTNNBIP1 domain containing.	Transmembrane protein 144.	0.676
PLCXD1	RTRAF	ENSAHAP00000016599	ENSAHAP00000018164	Phosphatidylinositol specific phospholipase C X domain containing 1.	RNA transcription, translation and transport factor.	0.646
PLCXD1	TMEM144	ENSAHAP00000016599	ENSAHAP00000001040	Phosphatidylinositol specific phospholipase C X domain containing 1.	Transmembrane protein 144.	0.622
PLCXD1	TMEM19	ENSAHAP00000016599	ENSAHAP00000014378	Phosphatidylinositol specific phospholipase C X domain containing 1.	Transmembrane protein 19.	0.476
PLCXD1	TMEM192	ENSAHAP00000016599	ENSAHAP00000004546	Phosphatidylinositol specific phospholipase C X domain containing 1.	Transmembrane protein 192.	0.496
RTRAF	PLCXD1	ENSAHAP00000018164	ENSAHAP00000016599	RNA transcription, translation and transport factor.	Phosphatidylinositol specific phospholipase C X domain containing 1.	0.646
RTRAF	TMEM144	ENSAHAP00000018164	ENSAHAP00000001040	RNA transcription, translation and transport factor.	Transmembrane protein 144.	0.662
RTRAF	TMEM19	ENSAHAP00000018164	ENSAHAP00000014378	RNA transcription, translation and transport factor.	Transmembrane protein 19.	0.640
RTRAF	TMEM192	ENSAHAP00000018164	ENSAHAP00000004546	RNA transcription, translation and transport factor.	Transmembrane protein 192.	0.633
SLC35B3	TMEM144	ENSAHAP00000023433	ENSAHAP00000001040	Solute carrier family 35 member B3.	Transmembrane protein 144.	0.604
SLC35E4	ENSAHAP00000015845	ENSAHAP00000002109	ENSAHAP00000015845	Solute carrier family 35 member E4.	annotation not available	0.663
SLC35E4	TMEM144	ENSAHAP00000002109	ENSAHAP00000001040	Solute carrier family 35 member E4.	Transmembrane protein 144.	0.604
TMEM144	ENSAHAP00000015845	ENSAHAP00000001040	ENSAHAP00000015845	Transmembrane protein 144.	annotation not available	0.599
TMEM144	ENSAHAP00000019845	ENSAHAP00000001040	ENSAHAP00000019845	Transmembrane protein 144.	annotation not available	0.618