STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAHAP00000001064annotation not available (220 aa)    
Predicted Functional Partners:
C9orf72
C9orf72-SMCR8 complex subunit.
    
  0.903
SMCR8
SMCR8-C9orf72 complex subunit.
    
 0.899
SQSTM1
Sequestosome 1.
    
 0.898
RAB39B
RAB39B, member RAS oncogene family.
   
  0.898
WDR41
WD repeat domain 41.
     
  0.887
RAB8A
RAB8A, member RAS oncogene family.
     
  0.829
RAB8B
RAB8B, member RAS oncogene family.
     
  0.779
RAB10
RAB10, member RAS oncogene family.
     
  0.779
RAB15
RAB15, member RAS oncogene family.
     
  0.779
ENSAHAP00000015203
annotation not available
     
  0.779
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.