STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VWA5B2Von Willebrand factor A domain containing 5B2. (1049 aa)    
Predicted Functional Partners:
PARG
poly(ADP-ribose) glycohydrolase.
    
 0.908
RFC4
Replication factor C subunit 4.
   
 0.840
RFC5
Replication factor C subunit 5.
   
  0.838
RFC3
Replication factor C subunit 3.
   
 0.834
RFC2
Replication factor C subunit 2.
   
  0.824
PCNA
Proliferating cell nuclear antigen.
   
 0.822
XRCC5
X-ray repair cross complementing 5.
   
 
 0.822
XRCC6
X-ray repair cross complementing 6.
   
 
 0.810
LIG4
DNA ligase 4.
   
 
 0.752
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.749
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.