STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RLIMRing finger protein, LIM domain interacting. (610 aa)    
Predicted Functional Partners:
ENSAHAP00000026137
annotation not available
    
 0.943
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.927
ENSAHAP00000003800
annotation not available
   
 0.824
UBE2D2
Ubiquitin conjugating enzyme E2 D2.
   
 0.824
UBE2D3
Ubiquitin conjugating enzyme E2 D3.
   
 0.824
LDB1
LIM domain binding 1.
    
 
 0.823
LDB2
LIM domain binding 2.
    
 
 0.823
SMAD7
SMAD family member 7.
    
 0.822
UBXN1
UBX domain protein 1.
   
 
 0.793
UBE2K
Ubiquitin conjugating enzyme E2 K.
    
 0.752
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.