STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAHAP00000001186annotation not available (275 aa)    
Predicted Functional Partners:
LIG3
DNA ligase 3.
   
 0.994
REC114
REC114 meiotic recombination protein.
   
 0.978
PCNA
Proliferating cell nuclear antigen.
    
 0.978
APTX
Aprataxin.
    
 
 0.972
APLF
Aprataxin and PNKP like factor.
    
 
 0.971
TDP1
tyrosyl-DNA phosphodiesterase 1.
   
 
 0.968
PARG
poly(ADP-ribose) glycohydrolase.
    
 
 0.964
XRCC6
X-ray repair cross complementing 6.
    
 
 0.958
PARP1
poly(ADP-ribose) polymerase 1.
    
 
 0.944
RNF146
Ring finger protein 146.
    
 
 0.936
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.