STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZSWIM3Zinc finger SWIM-type containing 3. (751 aa)    
Predicted Functional Partners:
ARID4B
AT-rich interaction domain 4B.
   
 0.926
ARID4A
AT-rich interaction domain 4A.
   
 0.926
ZSWIM7
Zinc finger SWIM-type containing 7.
   
  
 0.806
MEAF6
MYST/Esa1 associated factor 6.
    
 0.781
TRRAP
Transformation/transcription domain associated protein.
   
 0.776
DMAP1
DNA methyltransferase 1 associated protein 1.
    
 0.742
ACTL6A
Actin like 6A.
    
 0.694
EPC1
Enhancer of polycomb homolog 1.
    
 0.693
EPC2
Enhancer of polycomb homolog 2.
    
 0.693
BRPF3
Bromodomain and PHD finger containing 3.
    
 0.689
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.