STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZSWIM3Zinc finger SWIM-type containing 3. (751 aa)    
Predicted Functional Partners:
ARID4B
AT-rich interaction domain 4B.
   
 0.970
ARID4A
AT-rich interaction domain 4A.
   
 0.970
MEAF6
MYST/Esa1 associated factor 6.
    
 0.871
TRRAP
Transformation/transcription domain associated protein.
   
 0.846
DMAP1
DNA methyltransferase 1 associated protein 1.
   
 0.829
TAF6L
TATA-box binding protein associated factor 6 like.
    
 0.799
ACTL6A
Actin like 6A.
    
 0.780
SAMD13
Sterile alpha motif domain containing 13.
    
 0.760
KAT6A
Lysine acetyltransferase 6A.
    
 0.760
KAT6B
Lysine acetyltransferase 6B.
    
 0.760
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.