ENSAHAP00000001292 protein (Apteryx haastii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSAHAP00000001292

annotation not available (132 aa)

Predicted Functional Partners:

SGCG

0.998

DAG1

0.998

ENSAHAP00000003030

0.994

SNTA1

0.987

ENSAHAP00000016861

0.986

SNTG1

0.973

CAV3

0.972

SGCA

0.970

SGCE

0.970

ENSAHAP00000020319

0.968

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAV3	DAG1	ENSAHAP00000028009	ENSAHAP00000020212	Caveolin 3.	Dystroglycan 1.	0.978
CAV3	ENSAHAP00000001292	ENSAHAP00000028009	ENSAHAP00000001292	Caveolin 3.	annotation not available	0.972
CAV3	ENSAHAP00000003030	ENSAHAP00000028009	ENSAHAP00000003030	Caveolin 3.	annotation not available	0.811
CAV3	ENSAHAP00000016861	ENSAHAP00000028009	ENSAHAP00000016861	Caveolin 3.	annotation not available	0.843
CAV3	ENSAHAP00000020319	ENSAHAP00000028009	ENSAHAP00000020319	Caveolin 3.	annotation not available	0.811
CAV3	SGCA	ENSAHAP00000028009	ENSAHAP00000000352	Caveolin 3.	Sarcoglycan alpha.	0.886
CAV3	SGCE	ENSAHAP00000028009	ENSAHAP00000019419	Caveolin 3.	Sarcoglycan epsilon.	0.886
CAV3	SGCG	ENSAHAP00000028009	ENSAHAP00000018697	Caveolin 3.	Sarcoglycan gamma.	0.960
CAV3	SNTA1	ENSAHAP00000028009	ENSAHAP00000024018	Caveolin 3.	Syntrophin alpha 1.	0.975
CAV3	SNTG1	ENSAHAP00000028009	ENSAHAP00000014247	Caveolin 3.	Syntrophin gamma 1.	0.798
DAG1	CAV3	ENSAHAP00000020212	ENSAHAP00000028009	Dystroglycan 1.	Caveolin 3.	0.978
DAG1	ENSAHAP00000001292	ENSAHAP00000020212	ENSAHAP00000001292	Dystroglycan 1.	annotation not available	0.998
DAG1	ENSAHAP00000003030	ENSAHAP00000020212	ENSAHAP00000003030	Dystroglycan 1.	annotation not available	0.994
DAG1	ENSAHAP00000016861	ENSAHAP00000020212	ENSAHAP00000016861	Dystroglycan 1.	annotation not available	0.988
DAG1	ENSAHAP00000020319	ENSAHAP00000020212	ENSAHAP00000020319	Dystroglycan 1.	annotation not available	0.967
DAG1	SGCA	ENSAHAP00000020212	ENSAHAP00000000352	Dystroglycan 1.	Sarcoglycan alpha.	0.959
DAG1	SGCE	ENSAHAP00000020212	ENSAHAP00000019419	Dystroglycan 1.	Sarcoglycan epsilon.	0.959
DAG1	SGCG	ENSAHAP00000020212	ENSAHAP00000018697	Dystroglycan 1.	Sarcoglycan gamma.	0.998
DAG1	SNTA1	ENSAHAP00000020212	ENSAHAP00000024018	Dystroglycan 1.	Syntrophin alpha 1.	0.996
DAG1	SNTG1	ENSAHAP00000020212	ENSAHAP00000014247	Dystroglycan 1.	Syntrophin gamma 1.	0.973