STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACBD4acyl-CoA binding domain containing 4. (359 aa)    
Predicted Functional Partners:
VAPA
VAMP associated protein A.
    
 
 0.864
VAPB
VAMP associated protein B and C.
    
 
 0.853
AGPS
Alkylglycerone phosphate synthase.
    
 
 0.786
SCP2
Sterol carrier protein 2.
   
 0.739
GDAP1
Ganglioside induced differentiation associated protein 1.
     
 0.730
PEX14
Peroxisomal biogenesis factor 14.
   
 0.716
PEX13
Peroxisomal biogenesis factor 13.
   
 0.715
HADHB
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta.
  
 
 0.708
ABCD3
ATP binding cassette subfamily D member 3.
  
 
 0.688
ENSAHAP00000000096
annotation not available
     
 0.683
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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