STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP2Matrix metallopeptidase 2. (663 aa)    
Predicted Functional Partners:
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.936
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.927
HBEGF
Heparin binding EGF like growth factor.
    
 0.902
MMP9
Matrix metallopeptidase 9.
   
 0.897
MMP1
Matrix metallopeptidase 1.
   
 0.888
THBS1
Thrombospondin 1.
   
 0.851
SRC
SRC proto-oncogene, non-receptor tyrosine kinase.
    
 0.845
EDN1
Endothelin 1.
     
 0.832
CYBA
Cytochrome b-245 alpha chain.
     
 0.819
NCF1
Neutrophil cytosolic factor 1.
     
  0.818
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.