STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRNAU1APtRNA selenocysteine 1 associated protein 1. (282 aa)    
Predicted Functional Partners:
ENSAHAP00000004937
annotation not available
   
 0.974
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
    
 0.974
PRPF39
pre-mRNA processing factor 39.
   
 0.974
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
   
 0.967
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.959
SF1
Splicing factor 1.
    
 0.957
ENSAHAP00000023333
annotation not available
    
 0.954
ENSAHAP00000022277
annotation not available
   
 0.949
SF3B1
Splicing factor 3b subunit 1.
   
 0.944
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.944
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.