ENSAHAP00000001356 protein (Apteryx haastii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSAHAP00000001356

annotation not available (180 aa)

Predicted Functional Partners:

TSHZ3

0.617

PBX1

0.568

PBX4

0.568

PBX3

0.568

TSHZ2

0.545

TSHZ1

0.545

HNF1B

0.528

SRF

0.523

HNF1A

0.516

HOXD12

0.515

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAHAP00000001356	HNF1A	ENSAHAP00000001356	ENSAHAP00000003573	annotation not available	HNF1 homeobox A.	0.516
ENSAHAP00000001356	HNF1B	ENSAHAP00000001356	ENSAHAP00000013961	annotation not available	HNF1 homeobox B.	0.528
ENSAHAP00000001356	HOXD12	ENSAHAP00000001356	ENSAHAP00000010895	annotation not available	Homeobox D12.	0.515
ENSAHAP00000001356	PBX1	ENSAHAP00000001356	ENSAHAP00000005951	annotation not available	PBX homeobox 1.	0.568
ENSAHAP00000001356	PBX3	ENSAHAP00000001356	ENSAHAP00000014034	annotation not available	PBX homeobox 3.	0.568
ENSAHAP00000001356	PBX4	ENSAHAP00000001356	ENSAHAP00000012412	annotation not available	PBX homeobox 4.	0.568
ENSAHAP00000001356	SRF	ENSAHAP00000001356	ENSAHAP00000011011	annotation not available	Serum response factor.	0.523
ENSAHAP00000001356	TSHZ1	ENSAHAP00000001356	ENSAHAP00000019668	annotation not available	Teashirt zinc finger homeobox 1.	0.545
ENSAHAP00000001356	TSHZ2	ENSAHAP00000001356	ENSAHAP00000017350	annotation not available	Teashirt zinc finger homeobox 2.	0.545
ENSAHAP00000001356	TSHZ3	ENSAHAP00000001356	ENSAHAP00000022555	annotation not available	Teashirt zinc finger homeobox 3.	0.617
HNF1A	ENSAHAP00000001356	ENSAHAP00000003573	ENSAHAP00000001356	HNF1 homeobox A.	annotation not available	0.516
HNF1A	HNF1B	ENSAHAP00000003573	ENSAHAP00000013961	HNF1 homeobox A.	HNF1 homeobox B.	0.981
HNF1B	ENSAHAP00000001356	ENSAHAP00000013961	ENSAHAP00000001356	HNF1 homeobox B.	annotation not available	0.528
HNF1B	HNF1A	ENSAHAP00000013961	ENSAHAP00000003573	HNF1 homeobox B.	HNF1 homeobox A.	0.981
HOXD12	ENSAHAP00000001356	ENSAHAP00000010895	ENSAHAP00000001356	Homeobox D12.	annotation not available	0.515
HOXD12	PBX1	ENSAHAP00000010895	ENSAHAP00000005951	Homeobox D12.	PBX homeobox 1.	0.418
HOXD12	PBX3	ENSAHAP00000010895	ENSAHAP00000014034	Homeobox D12.	PBX homeobox 3.	0.418
HOXD12	PBX4	ENSAHAP00000010895	ENSAHAP00000012412	Homeobox D12.	PBX homeobox 4.	0.418
PBX1	ENSAHAP00000001356	ENSAHAP00000005951	ENSAHAP00000001356	PBX homeobox 1.	annotation not available	0.568
PBX1	HOXD12	ENSAHAP00000005951	ENSAHAP00000010895	PBX homeobox 1.	Homeobox D12.	0.418