STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FTOFTO alpha-ketoglutarate dependent dioxygenase. (579 aa)    
Predicted Functional Partners:
ALKBH5
alkB homolog 5, RNA demethylase.
     
 0.983
METTL14
Methyltransferase like 14.
   
  
 0.883
ALKBH1
alkB homolog 1, histone H2A dioxygenase.
     
 0.877
YTHDF1
YTH N6-methyladenosine RNA binding protein 1.
      
 0.841
WTAP
WT1 associated protein.
      
 0.839
YTHDC1
YTH domain containing 1.
      
 0.781
DIS3L2
DIS3 like 3'-5' exoribonuclease 2.
   
 
 0.755
METTL3
Methyltransferase like 3.
   
  
 0.708
MC4R
Melanocortin 4 receptor.
      
 0.707
VIRMA
Vir like m6A methyltransferase associated.
      
 0.693
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.