STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HPF1Histone PARylation factor 1. (329 aa)    
Predicted Functional Partners:
PARP1
poly(ADP-ribose) polymerase 1.
    
 
 0.935
PARP3
poly(ADP-ribose) polymerase family member 3.
    
 
 0.752
GMPPB
GDP-mannose pyrophosphorylase B.
    
   0.729
LARP7
La ribonucleoprotein 7, transcriptional regulator.
   
  
 0.644
CWC22
CWC22 spliceosome associated protein homolog.
      
 0.640
PARG
poly(ADP-ribose) glycohydrolase.
      
 0.639
EXOSC8
Exosome component 8.
   
  
 0.623
ADPRHL2
ADP-ribosylhydrolase like 2.
      
 0.599
TNKS
Tankyrase.
      
 0.592
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
      
 0.583
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.