STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPGRRetinitis pigmentosa GTPase regulator. (488 aa)    
Predicted Functional Partners:
PDE6D
Phosphodiesterase 6D.
    
 
 0.984
RPGRIP1L
RPGRIP1 like.
    
 
 0.980
NPHP4
Nephrocystin 4.
    
 
 0.972
NPHP1
Nephrocystin 1.
    
 
 0.972
RANGAP1
Ran GTPase activating protein 1.
   
 0.911
RANBP1
RAN binding protein 1.
   
 0.904
RAN
RAN, member RAS oncogene family.
   
 0.898
ADGRD1
Adhesion G protein-coupled receptor D1.
   
 0.898
XPO1
Exportin 1.
    
 0.876
ENSAHAP00000005925
annotation not available
   
 0.815
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.