STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMU1SMU1 DNA replication regulator and spliceosomal factor. (499 aa)    
Predicted Functional Partners:
IK
IK cytokine.
   
 0.999
MFAP1
Microfibril associated protein 1.
   
 0.998
SF3B3
Splicing factor 3b subunit 3.
   
 0.993
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.992
ZMAT2
Zinc finger matrin-type 2.
    
 0.992
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.989
PRPF31
pre-mRNA processing factor 31.
   
 0.989
PRPF8
pre-mRNA processing factor 8.
   
 0.987
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
  0.987
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.987
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.