STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LETM2Leucine zipper and EF-hand containing transmembrane protein 2. (477 aa)    
Predicted Functional Partners:
CCDC77
Coiled-coil domain containing 77.
    
   0.689
UQCRC1
Ubiquinol-cytochrome c reductase core protein 1.
   
 0.668
PMPCB
Peptidase, mitochondrial processing beta subunit.
   
 0.668
EIF3J
Eukaryotic translation initiation factor 3 subunit J.
    
 
 0.628
FAM118A
Family with sequence similarity 118 member A.
    
 
 0.628
PCGF3
Polycomb group ring finger 3.
      
 0.582
RHOG
Ras homolog family member G.
    
  0.573
BCS1L
BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone.
   
 0.556
RPL8
Ribosomal protein L8.
    
 
 0.540
AFG3L2
AFG3 like matrix AAA peptidase subunit 2.
   
 0.534
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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