Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MDFICMyoD family inhibitor domain containing. (333 aa)    
Predicted Functional Partners:
FRMD4B
FERM domain containing 4B.
    
 
 0.663
FRMD4A
FERM domain containing 4A.
    
 
 0.628
DTWD2
DTW domain containing 2.
      
 0.587
BDH2
3-hydroxybutyrate dehydrogenase 2.
      
 0.578
MTMR3
Myotubularin related protein 3.
      
 0.482
TMEM168
Transmembrane protein 168.
      
 0.477
SPRY1
Sprouty RTK signaling antagonist 1.
    
   0.471
ZFYVE26
Zinc finger FYVE-type containing 26.
    
   0.471
SPARC
Secreted protein acidic and cysteine rich.
      
 0.435
TFDP2
Transcription factor Dp-2.
      
 0.429
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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