Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF8Membrane associated ring-CH-type finger 8. (491 aa)    
Predicted Functional Partners:
UBE2H
Ubiquitin conjugating enzyme E2 H.
   
 
 0.847
UBE2G2
Ubiquitin conjugating enzyme E2 G2.
    
 0.708
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.695
REV1
REV1 DNA directed polymerase.
      
 0.680
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
   
 
 0.666
FAF1
Fas associated factor 1.
    
 0.642
FAF2
Fas associated factor family member 2.
    
 0.642
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.618
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.600
VCP
Valosin containing protein.
    
 0.600
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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