STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTN1Reticulon 1. (762 aa)    
Predicted Functional Partners:
BACE1
Beta-secretase 1.
    
 0.834
BACE2
Beta-secretase 2.
    
 0.834
REEP6
Receptor accessory protein 6.
    
 
 0.811
LINGO1
Leucine rich repeat and Ig domain containing 1.
   
 0.804
OMG
Oligodendrocyte myelin glycoprotein.
    
 0.731
DPM1
Dolichyl-phosphate mannosyltransferase subunit 1, catalytic.
   
 0.714
LINGO2
Leucine rich repeat and Ig domain containing 2.
    
 0.684
RTN4R
Reticulon 4 receptor.
    
 0.680
SEC63
SEC63 homolog, protein translocation regulator.
    
 
 0.668
MAEA
Macrophage erythroblast attacher.
    
 
 0.659
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.