STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
L3HYPDHtrans-L-3-hydroxyproline dehydratase. (300 aa)    
Predicted Functional Partners:
DAO
D-amino acid oxidase.
    
 0.915
CRYM
Crystallin mu.
 
  
 0.877
DDO
D-aspartate oxidase.
    
 0.875
PYCR3
Pyrroline-5-carboxylate reductase 3.
    
 0.830
ENSAHAP00000002592
annotation not available
    
 0.778
CCNE2
Cyclin E2.
    
   0.775
ENSAHAP00000003984
annotation not available
    
 0.713
TMED8
Transmembrane p24 trafficking protein family member 8.
    
 0.698
NOXRED1
NADP dependent oxidoreductase domain containing 1.
    
 0.698
MRPS16
Mitochondrial ribosomal protein S16.
    
  0.678
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.