STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C5orf49Chromosome 5 open reading frame 49. (138 aa)    
Predicted Functional Partners:
C9orf116
Chromosome 9 open reading frame 116.
   
 
 0.988
FAM183A
Family with sequence similarity 183 member A.
   
 
 0.979
C11orf1
Chromosome 11 open reading frame 1.
   
 
 0.960
EFCAB1
EF-hand calcium binding domain 1.
    
 
 0.956
C4orf47
Chromosome 4 open reading frame 47.
   
 
 0.947
CFAP126
Cilia and flagella associated protein 126.
   
 
 0.932
CFAP161
Cilia and flagella associated protein 161.
   
 
 0.923
CFAP52
Cilia and flagella associated protein 52.
   
   0.903
TEKT1
Tektin 1.
   
   0.900
ENSAHAP00000004318
annotation not available
   
   0.900
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.