RAI2 protein (Apteryx haastii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

RAI2

Retinoic acid induced 2. (602 aa)

Predicted Functional Partners:

SGTB

0.862

ENSAHAP00000004206

0.829

ENSAHAP00000004948

0.813

PODN

0.652

RPS28

0.637

ENSAHAP00000004243

0.635

ENSAHAP00000005998

0.631

ENSAHAP00000001079

0.628

ENSAHAP00000018586

0.607

RIMS2

0.606

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAHAP00000001079	ENSAHAP00000004948	ENSAHAP00000001079	ENSAHAP00000004948	annotation not available	annotation not available	0.999
ENSAHAP00000001079	ENSAHAP00000018586	ENSAHAP00000001079	ENSAHAP00000018586	annotation not available	annotation not available	0.999
ENSAHAP00000001079	RAI2	ENSAHAP00000001079	ENSAHAP00000001687	annotation not available	Retinoic acid induced 2.	0.628
ENSAHAP00000001079	RPS28	ENSAHAP00000001079	ENSAHAP00000012239	annotation not available	Ribosomal protein S28.	0.999
ENSAHAP00000004206	ENSAHAP00000004243	ENSAHAP00000004206	ENSAHAP00000004243	annotation not available	annotation not available	0.984
ENSAHAP00000004206	ENSAHAP00000005998	ENSAHAP00000004206	ENSAHAP00000005998	annotation not available	annotation not available	0.905
ENSAHAP00000004206	RAI2	ENSAHAP00000004206	ENSAHAP00000001687	annotation not available	Retinoic acid induced 2.	0.829
ENSAHAP00000004243	ENSAHAP00000004206	ENSAHAP00000004243	ENSAHAP00000004206	annotation not available	annotation not available	0.984
ENSAHAP00000004243	ENSAHAP00000005998	ENSAHAP00000004243	ENSAHAP00000005998	annotation not available	annotation not available	0.918
ENSAHAP00000004243	RAI2	ENSAHAP00000004243	ENSAHAP00000001687	annotation not available	Retinoic acid induced 2.	0.635
ENSAHAP00000004948	ENSAHAP00000001079	ENSAHAP00000004948	ENSAHAP00000001079	annotation not available	annotation not available	0.999
ENSAHAP00000004948	ENSAHAP00000018586	ENSAHAP00000004948	ENSAHAP00000018586	annotation not available	annotation not available	0.999
ENSAHAP00000004948	RAI2	ENSAHAP00000004948	ENSAHAP00000001687	annotation not available	Retinoic acid induced 2.	0.813
ENSAHAP00000004948	RPS28	ENSAHAP00000004948	ENSAHAP00000012239	annotation not available	Ribosomal protein S28.	0.999
ENSAHAP00000004948	SGTB	ENSAHAP00000004948	ENSAHAP00000016085	annotation not available	Small glutamine rich tetratricopeptide repeat containing beta.	0.496
ENSAHAP00000005998	ENSAHAP00000004206	ENSAHAP00000005998	ENSAHAP00000004206	annotation not available	annotation not available	0.905
ENSAHAP00000005998	ENSAHAP00000004243	ENSAHAP00000005998	ENSAHAP00000004243	annotation not available	annotation not available	0.918
ENSAHAP00000005998	RAI2	ENSAHAP00000005998	ENSAHAP00000001687	annotation not available	Retinoic acid induced 2.	0.631
ENSAHAP00000018586	ENSAHAP00000001079	ENSAHAP00000018586	ENSAHAP00000001079	annotation not available	annotation not available	0.999
ENSAHAP00000018586	ENSAHAP00000004948	ENSAHAP00000018586	ENSAHAP00000004948	annotation not available	annotation not available	0.999