EPHB3 protein (Apteryx haastii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

EPHB3

EPH receptor B3. (956 aa)

Predicted Functional Partners:

EFNB1

0.975

EFNB2

0.969

RASA1

0.872

EFNA5

0.860

EFNA2

0.855

NGEF

0.829

ENSAHAP00000028178

0.807

PDGFC

0.728

ENSAHAP00000027144

0.695

ENSAHAP00000028176

0.667

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFNA2	EFNA5	ENSAHAP00000000920	ENSAHAP00000001372	Ephrin A2.	Ephrin A5.	0.631
EFNA2	EFNB1	ENSAHAP00000000920	ENSAHAP00000011776	Ephrin A2.	Ephrin B1.	0.756
EFNA2	EFNB2	ENSAHAP00000000920	ENSAHAP00000016342	Ephrin A2.	Ephrin B2.	0.756
EFNA2	ENSAHAP00000028176	ENSAHAP00000000920	ENSAHAP00000028176	Ephrin A2.	annotation not available	0.474
EFNA2	ENSAHAP00000028178	ENSAHAP00000000920	ENSAHAP00000028178	Ephrin A2.	annotation not available	0.481
EFNA2	EPHB3	ENSAHAP00000000920	ENSAHAP00000001711	Ephrin A2.	EPH receptor B3.	0.855
EFNA2	NGEF	ENSAHAP00000000920	ENSAHAP00000022080	Ephrin A2.	Neuronal guanine nucleotide exchange factor.	0.568
EFNA2	RASA1	ENSAHAP00000000920	ENSAHAP00000022386	Ephrin A2.	RAS p21 protein activator 1.	0.886
EFNA5	EFNA2	ENSAHAP00000001372	ENSAHAP00000000920	Ephrin A5.	Ephrin A2.	0.631
EFNA5	EFNB1	ENSAHAP00000001372	ENSAHAP00000011776	Ephrin A5.	Ephrin B1.	0.812
EFNA5	EFNB2	ENSAHAP00000001372	ENSAHAP00000016342	Ephrin A5.	Ephrin B2.	0.811
EFNA5	ENSAHAP00000028176	ENSAHAP00000001372	ENSAHAP00000028176	Ephrin A5.	annotation not available	0.824
EFNA5	ENSAHAP00000028178	ENSAHAP00000001372	ENSAHAP00000028178	Ephrin A5.	annotation not available	0.909
EFNA5	EPHB3	ENSAHAP00000001372	ENSAHAP00000001711	Ephrin A5.	EPH receptor B3.	0.860
EFNA5	NGEF	ENSAHAP00000001372	ENSAHAP00000022080	Ephrin A5.	Neuronal guanine nucleotide exchange factor.	0.477
EFNA5	RASA1	ENSAHAP00000001372	ENSAHAP00000022386	Ephrin A5.	RAS p21 protein activator 1.	0.909
EFNB1	EFNA2	ENSAHAP00000011776	ENSAHAP00000000920	Ephrin B1.	Ephrin A2.	0.756
EFNB1	EFNA5	ENSAHAP00000011776	ENSAHAP00000001372	Ephrin B1.	Ephrin A5.	0.812
EFNB1	EFNB2	ENSAHAP00000011776	ENSAHAP00000016342	Ephrin B1.	Ephrin B2.	0.974
EFNB1	ENSAHAP00000028176	ENSAHAP00000011776	ENSAHAP00000028176	Ephrin B1.	annotation not available	0.658