STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS41VPS41 subunit of HOPS complex. (854 aa)    
Predicted Functional Partners:
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.999
VPS39
VPS39 subunit of HOPS complex.
   
 0.999
ENSAHAP00000007923
annotation not available
   
 0.999
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.999
VPS11
VPS11 core subunit of CORVET and HOPS complexes.
   
 0.999
STX17
Syntaxin 17.
    
 0.998
VPS8
VPS8 subunit of CORVET complex.
   
 0.997
TGFBRAP1
Transforming growth factor beta receptor associated protein 1.
   
 0.996
AP3D1
Adaptor related protein complex 3 subunit delta 1.
   
 0.995
ENSAHAP00000003194
annotation not available
   
 0.991
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.