STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF11PHD finger protein 11. (203 aa)    
Predicted Functional Partners:
SETDB2
SET domain bifurcated histone lysine methyltransferase 2.
     
 0.811
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.732
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.722
CDADC1
Cytidine and dCMP deaminase domain containing 1.
   
  
 0.686
SETDB1
SET domain bifurcated histone lysine methyltransferase 1.
     
 0.686
ENSAHAP00000004163
annotation not available
  
 0.676
RCBTB2
RCC1 and BTB domain containing protein 2.
     
 0.663
ADAM33
ADAM metallopeptidase domain 33.
      
 0.647
DOT1L
DOT1 like histone lysine methyltransferase.
    
 0.631
RCBTB1
RCC1 and BTB domain containing protein 1.
     
 0.630
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.