STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOXHD1Lipoxygenase homology domains 1. (2162 aa)    
Predicted Functional Partners:
ADGRV1
Adhesion G protein-coupled receptor V1.
  
 
 
 0.696
USH2A
Usherin.
    
 0.633
RNF165
Ring finger protein 165.
    
 
 0.623
SLC26A5
Solute carrier family 26 member 5.
   
 
 0.608
SLC4A7
Solute carrier family 4 member 7.
      
 0.607
AGBL1
ATP/GTP binding protein like 1.
    
 
 0.600
SLC4A11
Solute carrier family 4 member 11.
      
 0.579
CDH23
Cadherin related 23.
      
 0.575
RPS6KC1
Ribosomal protein S6 kinase C1.
    
 0.574
TSPEAR
Thrombospondin type laminin G domain and EAR repeats.
    
 0.558
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.