Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C18orf25Chromosome 18 open reading frame 25. (382 aa)    
Predicted Functional Partners:
SUMO1
Small ubiquitin like modifier 1.
    
 
 0.945
CSNK2A2
Casein kinase 2 alpha 2.
    
   0.723
ENSAHAP00000017708
annotation not available
    
   0.723
ENSAHAP00000027898
annotation not available
    
   0.723
NAA25
N(alpha)-acetyltransferase 25, NatB auxiliary subunit.
      
 0.579
TP53BP1
Tumor protein p53 binding protein 1.
    
   0.549
RHNO1
RAD9-HUS1-RAD1 interacting nuclear orphan 1.
      
 0.477
CDV3
CDV3 homolog.
  
     0.473
SUMO4
Small ubiquitin like modifier 4.
    
 
 0.461
SUMO3
Small ubiquitin like modifier 3.
    
 
 0.461
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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