STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC20Leucine rich repeat containing 20. (123 aa)    
Predicted Functional Partners:
NPVF
Neuropeptide VF precursor.
     
  0.821
LRRC30
Leucine rich repeat containing 30.
  
   
 0.737
LRRC38
Leucine rich repeat containing 38.
      
 0.660
SLITRK6
SLIT and NTRK like family member 6.
      
 0.652
GPR135
G protein-coupled receptor 135.
     
  0.651
NPFFR1
Neuropeptide FF receptor 1.
     
  0.651
NPFFR2
Neuropeptide FF receptor 2.
     
  0.651
TMEM38A
Transmembrane protein 38A.
   
 
 0.649
ASB12
Ankyrin repeat and SOCS box containing 12.
   
 0.641
ASB8
Ankyrin repeat and SOCS box containing 8.
    
 0.639
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.