ASB3 protein (Apteryx haastii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ASB3

Ankyrin repeat and SOCS box containing 3. (445 aa)

Predicted Functional Partners:

CUL5

0.973

ELOC

0.968

ENSAHAP00000022937

0.918

CHAC2

0.809

GPR75

0.808

ENSAHAP00000005217

0.808

BABAM2

0.804

BRCA1

0.795

BRCC3

0.784

MYSM1

0.765

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB3	BABAM2	ENSAHAP00000001953	ENSAHAP00000017767	Ankyrin repeat and SOCS box containing 3.	BRISC and BRCA1 A complex member 2.	0.804
ASB3	BRCA1	ENSAHAP00000001953	ENSAHAP00000012520	Ankyrin repeat and SOCS box containing 3.	BRCA1 DNA repair associated.	0.795
ASB3	BRCC3	ENSAHAP00000001953	ENSAHAP00000024038	Ankyrin repeat and SOCS box containing 3.	BRCA1/BRCA2-containing complex subunit 3.	0.784
ASB3	CHAC2	ENSAHAP00000001953	ENSAHAP00000001963	Ankyrin repeat and SOCS box containing 3.	ChaC cation transport regulator homolog 2.	0.809
ASB3	CUL5	ENSAHAP00000001953	ENSAHAP00000018159	Ankyrin repeat and SOCS box containing 3.	Cullin 5.	0.973
ASB3	ELOC	ENSAHAP00000001953	ENSAHAP00000000304	Ankyrin repeat and SOCS box containing 3.	Elongin C.	0.968
ASB3	ENSAHAP00000005217	ENSAHAP00000001953	ENSAHAP00000005217	Ankyrin repeat and SOCS box containing 3.	annotation not available	0.808
ASB3	ENSAHAP00000022937	ENSAHAP00000001953	ENSAHAP00000022937	Ankyrin repeat and SOCS box containing 3.	annotation not available	0.918
ASB3	GPR75	ENSAHAP00000001953	ENSAHAP00000002324	Ankyrin repeat and SOCS box containing 3.	G protein-coupled receptor 75.	0.808
ASB3	MYSM1	ENSAHAP00000001953	ENSAHAP00000014031	Ankyrin repeat and SOCS box containing 3.	Myb like, SWIRM and MPN domains 1.	0.765
BABAM2	ASB3	ENSAHAP00000017767	ENSAHAP00000001953	BRISC and BRCA1 A complex member 2.	Ankyrin repeat and SOCS box containing 3.	0.804
BABAM2	BRCA1	ENSAHAP00000017767	ENSAHAP00000012520	BRISC and BRCA1 A complex member 2.	BRCA1 DNA repair associated.	0.999
BABAM2	BRCC3	ENSAHAP00000017767	ENSAHAP00000024038	BRISC and BRCA1 A complex member 2.	BRCA1/BRCA2-containing complex subunit 3.	0.999
BABAM2	ENSAHAP00000005217	ENSAHAP00000017767	ENSAHAP00000005217	BRISC and BRCA1 A complex member 2.	annotation not available	0.999
BABAM2	MYSM1	ENSAHAP00000017767	ENSAHAP00000014031	BRISC and BRCA1 A complex member 2.	Myb like, SWIRM and MPN domains 1.	0.882
BRCA1	ASB3	ENSAHAP00000012520	ENSAHAP00000001953	BRCA1 DNA repair associated.	Ankyrin repeat and SOCS box containing 3.	0.795
BRCA1	BABAM2	ENSAHAP00000012520	ENSAHAP00000017767	BRCA1 DNA repair associated.	BRISC and BRCA1 A complex member 2.	0.999
BRCA1	BRCC3	ENSAHAP00000012520	ENSAHAP00000024038	BRCA1 DNA repair associated.	BRCA1/BRCA2-containing complex subunit 3.	0.999
BRCA1	ENSAHAP00000005217	ENSAHAP00000012520	ENSAHAP00000005217	BRCA1 DNA repair associated.	annotation not available	0.999
BRCA1	MYSM1	ENSAHAP00000012520	ENSAHAP00000014031	BRCA1 DNA repair associated.	Myb like, SWIRM and MPN domains 1.	0.983