Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3A1Splicing factor 3a subunit 1. (867 aa)    
Predicted Functional Partners:
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.999
SF3B1
Splicing factor 3b subunit 1.
   
 0.999
SF3B4
Splicing factor 3b subunit 4.
   
 0.999
SF3A2
Splicing factor 3a subunit 2.
   
 0.999
SF3A3
Splicing factor 3a subunit 3.
   
 0.999
SF3B5
Splicing factor 3b subunit 5.
    
 0.999
PRPF40A
pre-mRNA processing factor 40 homolog A.
   
 0.999
PRPF8
pre-mRNA processing factor 8.
   
 0.998
SF3B3
Splicing factor 3b subunit 3.
   
 0.998
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.997
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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