STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCLYSelenocysteine lyase. (444 aa)    
Predicted Functional Partners:
ISCU
Iron-sulfur cluster assembly enzyme.
 
 0.994
SEPHS1
Selenophosphate synthetase 1.
  
 0.977
FXN
Frataxin.
   
 0.966
ENSAHAP00000022604
annotation not available
   
 0.957
NFU1
NFU1 iron-sulfur cluster scaffold.
  
 0.933
ISCA2
Iron-sulfur cluster assembly 2.
  
 
 0.928
ISCA1
Iron-sulfur cluster assembly 1.
  
 
 0.928
TXNRD2
Thioredoxin reductase 2.
   
 0.918
TXNRD1
Thioredoxin reductase 1.
   
 0.917
TXNRD3
Thioredoxin reductase 3.
   
 0.917
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.