STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAHAP00000001973annotation not available (200 aa)    
Predicted Functional Partners:
ENSAHAP00000014665
annotation not available
    
   0.715
RPGR
Retinitis pigmentosa GTPase regulator.
   
 
 0.712
CYB5R4
Cytochrome b5 reductase 4.
    
   0.657
TTC8
Tetratricopeptide repeat domain 8.
   
  
 0.598
RD3
Retinal degeneration 3, GUCY2D regulator.
      
 0.594
SPATA17
Spermatogenesis associated 17.
      
 0.593
ENSAHAP00000020391
annotation not available
      
 0.592
ENSAHAP00000005173
annotation not available
      
 0.576
LCA5
Lebercilin LCA5.
      
 0.576
TULP1
TUB like protein 1.
      
 0.576
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.