Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM187AFamily with sequence similarity 187 member A. (410 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.665
UBXN7
UBX domain protein 7.
   
   0.648
HIGD1A
HIG1 hypoxia inducible domain family member 1A.
      
 0.599
ENSAHAP00000026137
annotation not available
    
 0.538
SEC63
SEC63 homolog, protein translocation regulator.
    
 
 0.507
ZFAND4
Zinc finger AN1-type containing 4.
   
 0.457
CHMP5
Charged multivesicular body protein 5.
     
  0.456
ENSAHAP00000004948
annotation not available
    
 0.449
OASL
2'-5'-oligoadenylate synthetase like.
    
  0.434
ENSAHAP00000015435
annotation not available
    
  0.434
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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