STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPF1Ribosome production factor 1 homolog. (463 aa)    
Predicted Functional Partners:
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.999
MAK16
MAK16 homolog.
   
 0.999
MRTO4
MRT4 homolog, ribosome maturation factor.
   
 0.999
RRP15
Ribosomal RNA processing 15 homolog.
   
 0.999
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.999
NIP7
Nucleolar pre-rRNA processing protein NIP7.
   
 0.999
EBNA1BP2
EBNA1 binding protein 2.
   
 0.999
WDR74
WD repeat domain 74.
   
 0.999
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.999
WDR12
WD repeat domain 12.
   
 0.999
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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